4qpq_ABCDEFGH : 3D-footprint complex

structure name	MECHANISTIC BASIS OF PLASMID-SPECIFIC DNA BINDING OF THE F PLASMID REGULATORY PROTEIN, TRAM
reference	Glover et al. J.Mol.Biol. 426 3783 2014
source	Escherichia coli
experiment	X-ray (resolution=3.11, R-factor=?)
structural superfamily	IHF-like DNA-binding proteins;
reference complex	4qpq_H
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4qpq_A interface=2,4,6, aKvNlYisndayekinaiiekrrqegarekdvsfsatasmllelglrvhe > 4qpq_B interface=2,4,6, aKvNlYisndayekinaiiekrrqegarekdvsfsatasmllelglrvheaq > 4qpq_C interface=2,4,6, aKvNlYisndayekinaiiekrrqegarekdvsfsatasmllelglrvheaq > 4qpq_D interface=2,4,6, aKvNlYisndayekinaiiekrrqegarekdvsfsatasmllelglrvheaq > 4qpq_E interface=2,4,6, aKvNlYisndayekinaiiekrrqegarekdvsfsatasmllelglrvhe > 4qpq_F interface=2,4,6, aKvNlYisndayekinaiiekrrqegarekdvsfsatasmllelglrvheaq > 4qpq_G interface=2,4,6, aKvNlYisndayekinaiiekrrqegarekdvsfsatasmllelglrvhe > 4qpq_H interface=2,4,6, aKvNlYisndayekinaiiekrrqegarekdvsfsatasmllelglrvhea
interface signature	KNY/KNY/KNY/KNY/KNY/KNY/KNY/KNY

Estimated binding specificities ?

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# IC=32.458 IC/col=1.248 n_of_columns=26

specificity:

A |   0  96   0  13   0   0   0  96   0   0  96   0   0   0   0   0   0   0   0  96   0   0  13   0   0  96
C |  96   0  96  57   0  96   0   0   0  96   0   0  96   0  96  96  96  96   0   0   0  96  13   0   0   0
G |   0   0   0  13  96   0   0   0  96   0   0  96   0  96   0   0   0   0   0   0  96   0  54  96   0   0
T |   0   0   0  13   0   0  96   0   0   0   0   0   0   0   0   0   0   0  96   0   0   0  16   0  96   0

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updated Fri Dec 15 20:35:37 2023