interface graph thumbnail
legend  pdf

structure nameMECHANISTIC BASIS OF PLASMID-SPECIFIC DNA BINDING OF THE F PLASMID REGULATORY PROTEIN, TRAM
(Relaxosome protein TraM)
referenceGlover et al. J.Mol.Biol. 426 3783 2014
sourceEscherichia coli
experimentX-ray (resolution=3.11, R-factor=0.224)
structural superfamilyIHF-like DNA-binding proteins;
multimeric complexes4qpq_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKNY

Estimated binding specificities ?

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# IC=5.339 IC/col=0.890 n_of_columns=6 specificity:   
A |  11   9   0   9   0   0
C |   9  69  96  67  96   0
G |  67   9   0   9   0   0
T |   9   9   0  11   0  96
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updated Tue Dec 19 09:21:51 2023