4on0_CD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF NOLR FROM SINORHIZOBIUM FREDII IN COMPLEX WITH OLIGO AA DNA
reference	Krishnan et al. Proc.Natl.Acad.Sci.USA 111 6509 2014
source	SINORHIZOBIUM FREDII
experiment	X-ray (resolution=3.00, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4on0_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4on0_C interface=50,52,53,55,56,60, qplspekheeaeiaagflsamanpkrllildslvkeemavgalankvglSqSAlSQhlsKlraqnlvstrrdaqtiyyssssdsvmkilgalseiyg > 4on0_D interface=51,52,53,55,56,74, qplspekheeaeiaagflsamanpkrllildslvkeemavgalankvglsQSAlSQhlsklraqnlvstrrdaQtiyyssssdsvmkilgalseiyg
interface signature	SSASQK/QSASQQ

Estimated binding specificities ?

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# IC=9.651 IC/col=0.603 n_of_columns=16

specificity:

A |   5   5  96   0  24  24  24  24  24  24   0   0   0  71   0   5
C |   1  10   0   0  24  24  24  24  24  24  80   0  10  10   0   0
G |  15   5   0  96  24  24  24  24  24  24   0   0  15   5   0  86
T |  75  76   0   0  24  24  24  24  24  24  16  96  71  10  96   5

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updated Fri Dec 15 20:21:59 2023