| structure name | CRYSTAL STRUCTURE OF NOLR FROM SINORHIZOBIUM FREDII IN COMPLEX WITH OLIGO AA DNA (NOLR) |
| reference | Krishnan et al. Proc.Natl.Acad.Sci.USA 111 6509 2014 |
| source | SINORHIZOBIUM FREDII |
| experiment | X-ray (resolution=3.00, R-factor=0.187) |
| structural superfamily | "Winged helix" DNA-binding domain; |
| sequence family | Bacterial regulatory protein, arsR family; |
| multimeric complexes | 4omy_AB 4omy_CD 4on0_AB 4on0_CD |
| redundant complexes |  4omy_D
|
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | SQSASQQ |
Estimated binding specificities ?
| readout + contact |  |
A | 5 73 24 5 96 1 5 96 7 C | 5 5 24 81 0 0 84 0 5 G | 7 13 24 5 0 5 0 0 79 T | 79 5 24 5 0 90 7 0 5scan! |
Dendrogram of similar interfaces ?
matrix format----------STQASGAT--STQT------------QA-- L +------4on0_B +---------4 ----------NTHG--RT--YTPT------------RT-- L ! +------6qil_A +-6 ----------TT--PTTC--STNT------------RT-- L ! ! +--------------4lln_I ! +-5 ----------QTPTPG--TTRG------------HT---- L +-7 ! +-----5xxp_A ! ! +--------3 ----------ST--PTTC--STQC------RA-------- L ! ! +-----1ddn_B +-8 ! ----------------------RC----YG--KT------ ! ! +------------------2acj_B ! ! --------ET--RGTCTG--STRG------------KT-- L ! ! +6q2b_B +---9 +--------------------1 --------NGLTKTPTST--TT--------RT----RT-- L ! ! +7el3_B ! ! ----------------------------YGRG-------- +-10 ! +----4wcg_A ! ! +-----------------2 ----------RG------VT----STRG------WT---- L ! ! +----6lxn_A -11 ! ----------HT--STAT--STRG---------------- L ! +--------------------------5lej_A ! LAHAKARA------------------------------IA +---------------------------6dta_A |
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updated Tue Dec 19 09:12:17 2023