4on0_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF NOLR FROM SINORHIZOBIUM FREDII IN COMPLEX WITH OLIGO AA DNA
reference	Krishnan et al. Proc.Natl.Acad.Sci.USA 111 6509 2014
source	SINORHIZOBIUM FREDII
experiment	X-ray (resolution=3.00, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4on0_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4on0_A interface=50,52,53,55,56,60, qplspekheeaeiaagflsamanpkrllildslvkeemavgalankvglSqSAlSQhlsKlraqnlvstrrdaqtiyyssssdsvmkilgalseiyg > 4on0_B interface=50,51,52,53,55,56,74, qplspekheeaeiaagflsamanpkrllildslvkeemavgalankvglSQSAlSQhlsklraqnlvstrrdaQtiyyssssdsvmkilgalseiyg
interface signature	SSASQK/SQSASQQ

Estimated binding specificities ?

readout + contact

# IC=12.388 IC/col=0.652 n_of_columns=19

specificity:

A |   5  80  24   5  96   0   5  96   5  24  24  24  24  24  24   0   0  80  96
C |   5   5  24  80   0   0  85   0   5  24  24  24  24  24  24  96   0   5   0
G |   5   5  24   5   0   6   1   0  80  24  24  24  24  24  24   0   0   5   0
T |  81   6  24   6   0  90   5   0   6  24  24  24  24  24  24   0  96   6   0

scan!

home
updated Fri Dec 15 20:21:50 2023