4lln_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF S. AUREUS MEPR-DNA COMPLEX
reference	Brennan et al. 'Nucleic 42 2774 2014
source	STAPHYLOCOCCUS AUREUS
experiment	X-ray (resolution=2.84, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4lln_I
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4lln_A interface=58,60,61,63,64,85, ftysylfrmishemkqkadqkleqfditneqghtlgylyahqqdgltqndiakalqrTgPTvSNllrnlerkkliyryvdaqdtRrkniglttsgiklveaftsifdemeqtlvsqlseeeneqmkanltkmlsslq > 4lln_B interface=59,61,62,64,65,86, eftysylfrmishemkqkadqkleqfditneqghtlgylyahqqdgltqndiakalqrTgPTvSNllrnlerkkliyryvdaqdtRrkniglttsgiklveaftsifdemeqtlvsqlseeeneqmkanltkmlsslq
interface signature	TPTSNR/TPTSNR

Estimated binding specificities ?

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# IC=15.249 IC/col=0.726 n_of_columns=21

specificity:

A |   2   0  24  24   1   2  96   7  89  24  24   2  10   0  91  89  24  24  89  89  71
C |   2   0  24  24   2   3   0   8   2  24  24   2  77   0   0   2  24  24   2   3   6
G |   2   0  24  24   2   0   0  71   2  24  24   2   7   0   3   2  24  24   3   2   8
T |  90  96  24  24  91  91   0  10   3  24  24  90   2  96   2   3  24  24   2   2  11

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updated Fri Dec 15 20:06:06 2023