interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF S. AUREUS MEPR-DNA COMPLEX
(MEPR)
referenceI.BIRUKOU et al. NUCLEIC ACIDS RES. V. 42 2774 2014
sourceSTAPHYLOCOCCUS AUREUS
experimentX-ray (resolution=2.84, R-factor=0.206)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyMarR family;
multimeric complexes4lll_AB 4lll_CD 4lll_IJ 4lln_AB 4lln_CD 4lln_IJ
redundant complexes4lll_D
links to other resourcesPDBSum NPIDB BIPA PDIdb DNAproDB
protein sequence
interface signatureTPTSNR

Estimated binding specificities ?

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# IC=6.247 IC/col=0.694 n_of_columns=9 specificity:   
A |   0   9  24  24   9   7  96   9  96
C |   0   7  24  24   7   7   0   7   0
G |   0   7  24  24   7   9   0  73   0
T |  96  73  24  24  73  73   0   7   0
scan!

Related DNA sequences reported in the literature ?


sitesourcematches (E-value)
term: MEPR
GTTAGPubMed4lln_I(2.93e-03), 4lln_CD(1.29e-02), 4lll_D(2.95e-03)
GTTAGATPubMed4lln_I(3.84e-04), 4lll_AB(6.35e-03), 4lll_CD(6.40e-03), ... (total=8)

Dendrogram of similar interfaces ?

matrix format



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updated Fri Apr  1 04:36:25 2022