| structure name | CRYSTAL STRUCTURE OF S. AUREUS MEPR-DNA COMPLEX (MEPR) |
| reference | Brennan et al. 'Nucleic 42 2774 2014 |
| source | STAPHYLOCOCCUS AUREUS |
| experiment | X-ray (resolution=2.84, R-factor=0.208) |
| structural superfamily | "Winged helix" DNA-binding domain; |
| sequence family | MarR family; |
| multimeric complexes | 4lll_AB 4lll_CD 4lll_IJ 4lln_AB 4lln_CD 4lln_IJ |
| redundant complexes |  4lll_D
|
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | TPTSNR |
Estimated binding specificities ?
| contact |  |
A | 0 9 24 24 9 9 96 7 96 C | 0 7 24 24 7 7 0 9 0 G | 0 7 24 24 7 7 0 73 0 T | 96 73 24 24 73 73 0 7 0scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: MEPR | ||
| GTTAG | PubMed | 4lln_I(2.93e-03), 4lln_CD(1.29e-02), 4lll_D(2.95e-03) |
| GTTAGAT | PubMed | 4lln_I(3.84e-04), 4lll_AB(6.35e-03), 4lll_CD(6.40e-03), ... (total=8) |
Dendrogram of similar interfaces ?
matrix format----TT--PTTC--STNT----------RT-- L +4lln_I +---------3 --ET--RGTCTG--STRG----------KT-- L ! ! +6q2b_B ! +-1 --NGLTKTPTST--TT----RT------RT-- L +------------5 +7el3_B ! ! ----DCSA--TA--TT----RT------RA-- L ! ! +1z9c_A +--9 +---------2 ----LTRTPTNA--VT------------RT-- L ! ! +6c2s_C ! ! ----STKGSTVA--STNTKTRC------RT-- L +-11 ! +--------------7dvv_A ! ! +-------6 ----------------RCYG--KT-------- ! ! +--------------2acj_B ! ! ----ST--PTTC--STQC--RA---------- L ! +-------------------------1ddn_B ! ------------------YGRG---------- +-12 +-4wcg_A ! ! +-------------4 RA--ST--ECTT--RAKA-------------- ! ! +-----7 +-7oz3_B ! ! ! ! ETNTSCRGHC----RT--------QA------ ! ! +--8 +---------------5d4s_B +-13 ! ! ! ----SGRGPT----SGRG-------------- L ! ! +-10 +---------------------7bhy_A ! ! ! ----QTPTPG--TTRG--------------HT L +-14 ! +------------------------5xxp_A ! ! ! ----HT--STAT--STRG-------------- L ! ! +---------------------------5lej_A -15 ! --------KGTA----TA--RG---------- L ! +----------------------------1xsd_A ! ------SGAAEC--SAKGRG------RG---- L +----------------------------7rva_C |
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updated Tue Dec 19 09:05:28 2023