4l62_MNOP : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA TRANSCRIPTIONAL REGULATOR PA2196 BOUND TO ITS OPERATOR DNA
reference	Choe et al. Biochem.Biophys.Res.Commun. 440 317 2013
source	Pseudomonas aeruginosa
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	Tetracyclin repressor-like, C-terminal domain;Homeodomain-like;
reference complex	4l62_M
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4l62_M interface=27,38,40,42,43, syddtrqhlldtgyrimavkgfsgvgLneilqsagvpKgSfYHyfkskeqfgqalledyfrvyladmdqrfsapglnarerlmsywqkwldnacppcdeqrclvvklsaevadlsesmritlrdgsdgiierlvgclgqgrddgslapcdarhmasalyqlwlgasllsklhrspgpletamqttrslle > 4l62_N interface=34,35,37,39,40, dtrqhlldtgyrimavkgfsgvglneilqsagvPKgSfYHyfkskeqfgqalledyfrvyladmdqrfsapglnarerlmsywqkwldnacppcdeqrclvvklsaevadlsesmritlrdgsdgiierlvgclgqgrddgslapcdarhmasalyqlwlgasllsklhrspgpletamqttrslle > 4l62_O interface=27,28,40,42, syddtrqhlldtgyrimavkgfsgvgLNeilqsagvpkgSfYhyfkskeqfgqalledyfrvyladmdqrfsapglnarerlmsywqkwldnacppcdeqrclvvklsaevadlsesmritlrdgsdgiierlvgclgqgrddgslapcdarhmasalyqlwlgasllsklhrspgpletamqttrslle > 4l62_P interface=34,35,37,39,40, dtrqhlldtgyrimavkgfsgvglneilqsagvPKgSfYHyfkskeqfgqalledyfrvyladmdqrfsapglnarerlmsywqkwldnacppcdeqrclvvklsaevadlsesmritlrdgsdgiierlvgclgqgrddgslapcdarhmasalyqlwlgasllsklhrspgpletamqttrslle
interface signature	LKSYH/PKSYH/LNSY/PKSYH

Estimated binding specificities ?

readout + contact

# IC=16.946 IC/col=0.997 n_of_columns=17

specificity:

A |   3   7  24   0  96   0   7  93   0   5  10   0   0   7   1  96   0
C |   5   7  24   0   0  96  74   0   0   3  64   0   0  74   0   0   0
G |   3   7  24  96   0   0   7   0  96   3  12  96   0   8   3   0  96
T |  85  75  24   0   0   0   8   3   0  85  10   0  96   7  92   0   0

scan!

home
updated Fri Dec 15 20:00:46 2023