4jl3_ABCD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF MS6564-DNA COMPLEX
reference	Yang et al. J.Biol.Chem. 288 23687 2013
source	Mycobacterium smegmatis
experiment	X-ray (resolution=2.50, R-factor=?)
structural superfamily	Homeodomain-like;Tetracyclin repressor-like, C-terminal domain;
reference complex	4jl3_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4jl3_A interface=27,37,38,39,41, seksrvaiveatralllergfdglsiEavaakagvgKQTiYrwwpsrhalvadvlledadkilarmpktddvtadlaswagtlaaalttrrghamlktlmaaslehedtaarlregfsrpliesvrdrlrdedidadhaqaaadallgavvnavlsegrsysrqraetsariivaglrp > 4jl3_B interface=1,29,39,40,41,43,44, RrseksrvaiveatralllergfdglsiEavaakagvgKQTiYRwwpsrhalvadvlledadkilarmpktddvtadlaswagtlaaalttrrghamlktlmaaslehedtaarlregfsrpliesvrdrlrdedidadhaqaaadallgavvnavlsegrsysrqraetsariivaglrp > 4jl3_C interface=2,31,41,42,45,46, gSrrseksrvaiveatralllergfdglsiEavaakagvgKQtiYRwwpsrhalvadvlledadkilarmpktddvtadlaswagtlaaalttrrghamlktlmaaslehedtaarlregfsrpliesvrdrlrdedidadhaqaaadallgavvnavlsegrsysrqraetsariivaglr > 4jl3_D interface=1,29,39,40,43,44, RrseksrvaiveatralllergfdglsiEavaakagvgKQtiYRwwpsrhalvadvlledadkilarmpktddvtadlaswagtlaaalttrrghamlktlmaaslehedtaarlregfsrpliesvrdrlrdedidadhaqaaadallgavvnavlsegrsysrqraetsariivaglr
interface signature	EKQTY/REKQTYR/SEKQYR/REKQYR

Estimated binding specificities ?

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# IC=18.919 IC/col=0.996 n_of_columns=19

specificity:

A |   4   4  73   0  82   0   4   4   0  96   0   0   0   0  24  24   0   0   0
C |  73   6   9   0   6  96   4   4   0   0  96   0   0  96  24  24   0   0  96
G |  10  82  10  96   4   0  82  79   0   0   0  96   0   0  24  24  96   0   0
T |   9   4   4   0   4   0   6   9  96   0   0   0  96   0  24  24   0  96   0

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updated Fri Dec 15 19:46:44 2023