4hqe_AB : 3D-footprint complex

structure name	THE CRYSTAL STRUCTURE OF QSRR-DNA COMPLEX
reference	Zhang et al. Proc.Natl.Acad.Sci.USA 110 5010 2013
source	Staphylococcus aureus
experiment	X-ray (resolution=2.30, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4hqe_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4hqe_A interface=37,48,49,50,51,54, mmevcpyleetfkilgrswngliinylsrcndcsahFsdmkrdlktiTPRAlsLklselaqwelvekqiistspvqiiyvltekgkalaealhpieawaqsyvdl > 4hqe_B interface=35,36,46,47,48,49, evcpyleetfkilgrswngliinylsrcndcsahFSdmkrdlktiTPRAlslklselaqwelvekqiistspvqiiyvltekgkalaealhpieawaqsyvdltdqrt
interface signature	FTPRAL/FSTPRA

Estimated binding specificities ?

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# IC=10.604 IC/col=0.663 n_of_columns=16

specificity:

A |   0   0  60   0  72  24  24  24  24  24   2  96   2  96   2  82
C |   4   0   7   0   8  24  24  24  24  24   5   0  27   0  87   4
G |  90   0  19   0   8  24  24  24  24  24   2   0   2   0   5   2
T |   2  96  10  96   8  24  24  24  24  24  87   0  65   0   2   8

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updated Fri Dec 15 19:20:10 2023