4hf1_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF ISCR BOUND TO ITS PROMOTER
reference	Rajagopalan et al. Nat.Struct.Mol.Biol. 20 740 2013
source	Escherichia coli
experiment	X-ray (resolution=2.22, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4hf1_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4hf1_A interface=38,40,41,43,44,59,61, mrltskgryavtamldvalnseagpvpladiserqgiSlSYlEQlfsrlrknglvssvRgPgggyllgkdassiavgevisavdesvdalthalwrdlsdrltgflnnitlgelvnnqevldvsgrqht > 4hf1_B interface=38,40,41,43,44,59,61, mrltskgryavtamldvalnseagpvpladiserqgiSlSYlEQlfsrlrknglvssvRgPgggyllgkdassiavgevisavdaqgkggaqggdkalthalwrdlsdrltgflnnitlgelvnnqevl
interface signature	SSYEQRP/SSYEQRP

Estimated binding specificities ?

readout + contact

# IC=11.224 IC/col=0.591 n_of_columns=19

specificity:

A |   0   2  24   0  96  10  24  24  24  24  24  15   0  53  24   0   0  59   2
C |  96  94  24   0   0  53  24  24  24  24  24  18   0   0  24   0   0   5   7
G |   0   0  24   0   0  18  24  24  24  24  24  53   0  43  24  96  96  15  70
T |   0   0  24  96   0  15  24  24  24  24  24  10  96   0  24   0   0  17  17

scan!

home
updated Fri Dec 15 19:18:56 2023