4fcy_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE BACTERIOPHAGE MU TRANSPOSOSOME
reference	Montano et al. Nature 491 413 2012
source	ENTEROBACTERIA PHAGE MU
experiment	X-ray (resolution=3.71, R-factor=?)
structural superfamily	Ribonuclease H-like;Homeodomain-like;mu transposase, C-terminal domain;
reference complex	4fcy_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4fcy_A interface=59,60,63,102,127, drealwskwdnasdsqrrlaekwlpavqaademlnqgistktafatvaghyqvsastlRDkyYqvqkfakpdwaaalvsefdedawqfliadylrpekpafRkcyerlelaarehgwsipsratafRriqqldeamvvacregehalmehldamqwingdgylhnvfvrwfngdvirpktwfwqdvktrkilgwrcdvsenidsirlsfmdvvtrygipedfhitidnttggapnryrfkvkeddpkglfllmgakmhwleeyvdkhpalagaytgpnpqakpdnygdravdaelflktlaegvamfnartgretemcggklsfddvfereyartivrkpteeqkrmlllpaeavnvsrkgeftlkvggslkgaknvyynlalmlagvkkvvvrfdpqqlhstvycytldgrficeaeclreyrrrqkqlksatkaaikaqkq > 4fcy_B interface=56,57,59,60,63,102,121,122,123,126, drealwskwdnasdsqrrlaekwlpavqaademlnqgistktafatvaghyqvsaSTlRDkyYqvqkfakpdwaaalvsefdedawqfliadylrpekpafRkcyerlelaarehgwsipSRAtaFrriqqldeamvvacregehldamqwingdgylhnvfvrwfngdvirpktwfwqdvktrkilgwrcdvsenidsirlsfmdvvtrygipedfhitidntrgaankwltggapnryrfkvkeddpkglfllmgakmhwtsvvagkgwgqakpverafgvggleeyvdkhpalagaytgpygdravdaelflktlaegvamfnartgretemcggklsfddvfereyartivrkpteeqkrmlllpaeavnvsrkgeftlkvggslkgaknvyynlalmlagvkkvvvrfdpqqlhstvycytldgrficeaeclaaagreyrrrqkqlksatkaaikaqkqmdalevaellp
interface signature	RDYRR/STRDYRSRAF

Estimated binding specificities ?

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# IC=14.778 IC/col=0.360 n_of_columns=41

specificity:

A |   0   3  24  24  24  61  24  24  24  24  24  24  24  24  24  24  24  84  96  24  24   3   0  24   3   3   3  24  24  24  24  24  24  24  24  24  24   0   0  96  96
C |   0   3  24  24  24  11  24  24  24  24  24  24  24  24  24  24  24   6   0  24  24  90   0  24  14  11  92  24  24  24  24  24  24  24  24  24  24  96   0   0   0
G |  96  87  24  24  24  13  24  24  24  24  24  24  24  24  24  24  24   3   0  24  24   3  96  24   7  13   0  24  24  24  24  24  24  24  24  24  24   0  96   0   0
T |   0   3  24  24  24  11  24  24  24  24  24  24  24  24  24  24  24   3   0  24  24   0   0  24  72  69   1  24  24  24  24  24  24  24  24  24  24   0   0   0   0

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updated Fri Dec 15 18:52:58 2023