4cej_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF ADDAB-DNA-ADPNP COMPLEX AT 3 ANGSTROM RESOLUTION
reference	Krajewski et al. Nature 508 416 2014
source	BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168
experiment	X-ray (resolution=3.00, R-factor=?)
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;Restriction endonuclease-like;
reference complex	3u4q_A 3u4q_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4cej_A interface=101,105,109,122,123,279,359,437,438,569,773,793,795,796,980,984,1010,1074,1076,1078,1100,1102, twtddqwnaivstgqdilvaaaagsgktavlvermirkitaeenpidvdrllvvtftnasaaemkhriaealekelvqrpgslhirrqlsllnrasistlHsfcLqvlKkyyylidldpgfRIadqtegeligdevldelfedeyakgekaffelvdryttdrhdldlqflvkqvyeysrshpnpeawlesfvhlydvseksaieelpfyqyvkediamvlngakekllraleltkapggpapradnflddlaqideliqhqddfselykrvpavsfkRakavkgdefdpalldeatdlrngakklleklktdyftrspeqhlkslaemkpvietlvqlvisygkrfeaakqeksiidFsdlehyclailtaendkgerepseaarfyqeqfhevlvdeyqdtnlvqesilqlvtsgpeetgnlfmvgdvkqsiyrFRlaepllflskykrftesgegtgrkidlnknfrsradildstnflfkqlmggkigevdydeqaelklgaaypdndetetelllideletvqfeakaiakeirklisspfkvydgkkkthrniqyrdivillRsmpwapqimeelraqgipvyanltsgyfeavevavalsvlkvidnpyqdiplasvlrspivgadenelslirlenkkapyyeamkdylaagdrsdelyqklntfyghlqkwrafsknhsvseliwevyrdtkymdyvggmpggkqrqanlrvlydrarqyestafrglfrflrfiermqergddlgtarglseqedvvrlmtiHsskglefpvvfvaglgrnfNmMDlnksylldkelgfgtkyihpqlrisyptlpliamkkkmrrellseelrvlyvaltrakeklfligsckdhqkqlakwqasasqtdwllpefdryqartyldfigpalarhrdlhadisghparfavqmihsydlldermeekserleairrgepvpgsfafdekareqlswtyphqevtqirtKqsvSeikryrrpafmmkkgltaaekgtamHtvmqhiplshvpsieeaeqtvhrlyekellteeqkdaidieeivqffhteiggqligakwkdrEiPfSlalpakeiypdaheadepllvQgIidclyetedglyllayksdriegkfqhgfegaapilkkryetqiqlytkaveqiaktkvkgcalyffdgghiltl > 4cej_B interface=39,40,41,43,44,45,47,63,69,72,124,131,207,210,214,348,368,370,586,594,643,1056, gaeflvgrsgsgktkliinsiqdelrrapfgkpiiflvPDQmTFLmEyelaktpdmggmiraQvfsfsRlaWrvlqhtggmsrpfltstgvqmllrklieehkqefkvyqkasdksgftaqveRmltefkRyclepedirrmaesgtayrgervlseklhdlsilyqqmeksladqylhsedyltllaehiplaedikgahiyvdgFyqFtpqEfrvleqlmvhaehitfsltadkpsyerephelelfrmtgktyyrlhqkakelnlditykelsgterhtktpelahleaqyearpaipyaekqealtvmqaanrraelegiareihalvrekgyrykdvailarQpedykdmvkevfadyeipyFiDgkasmlnhpliefirssldvlkgnwryeavfrcvktellfplnepkakvreqvdqlenyciaygikgdrwtkgdrfqyrrfvsldddfaqtdqeiemenmlndtrdwivpplfqlqkrmkkaktvqekaealyryleetdvplkldqerqraeddgriieaqqhqqawdaviqlleefvemmgddeisldlfqqmieagaesltfslippaldqvFvgnmdlsRmygtsctfvlgandgvlparpdengvlsdddrewlktigvelssggreRlldehfliymafsspsdrlyvsypiadaegktllpsmivkrleelfphhkerlltnepeqvsdeeqlmyvvnksvaqsftasqlrlwtreydisdvwwstynvlmseqdrlqskklfsslffrnevkqlersvsrqlygeriqgsvsrmetfnacpfshfashglhlkerqffkleapdigqlfhsslklisdrlrdekldwrdltkeqcelfsydaverlapklqkeillssnrhyyvkeklqkivtrvsgilsehakasgfvpiglelgfggkgplppltfqlkngctmelvgridrvdkaesskglllrivaykssdkgldlaevyyglalqmltyldlsithsadwlgmratpagvlyfhihdpmiqsnlplgldeieqeifkkfkmkglllgdqevvrlmdttlqegRsniinaglkkdgslrsdsaavgekefdlltkhvrrtfqeageqitdgrvsiepykmknktpctycafksvcqfdesleeneyrplkaekdktilewikke
interface signature	HLKRIRFFRRHNMDKSHEPSQI/PDQTFLEQRWRRFFEQFDFRRR

Estimated binding specificities ?

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# IC=24.034 IC/col=0.687 n_of_columns=35

specificity:

A |   9  24  24  24  24   0   0  24  24  24  24  24  24  24  24  24  24   9   0   0   0   0   0   0   0  24   0   0  96   0   0   0   0   0   9
C |  11  24  24  24  24  96   0  24  24  24  24  24  24  24  24  24  24   9   0   0   0   0   0   0   0  24   0   0   0   0  96   0   0   0   9
G |  67  24  24  24  24   0   0  24  24  24  24  24  24  24  24  24  24   9   0   0  96   0   0   0   0  24   0   0   0  96   0  96  96   0   9
T |   9  24  24  24  24   0  96  24  24  24  24  24  24  24  24  24  24  69  96  96   0  96  96  96  96  24  96  96   0   0   0   0   0  96  69

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updated Fri Dec 15 18:46:10 2023