4cei_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF ADPNP-BOUND ADDAB WITH A FORKED DNA SUBSTRATE
reference	Krajewski et al. Nature 508 416 2014
source	BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;Restriction endonuclease-like;
reference complex	3u4q_A 3u4q_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4cei_A interface=106,128,130,131,182,284,364,442,443,577,781,801,804, kpadstwtddqwnaivstgqdilvaaaagsgktavlvermirkitaeenpidvdrllvvtftnasaaemkhriaealekelvqrpgslhirrqlsllnrasistlHsfclqvlkkyyylidldpgfrIaDQtegeligdevldelfedeyakgekaffelvdryttdrhdldlqflvkqvyEysrshpnpeawlesfvhlydvseksaieelpfyqyvkediamvlngakekllraleltkapggpapradnflddlaqideliqhqddfselykrvpavsfkRakavkgdefdpalldeatdlrngakklleklktdyftrspeqhlkslaemkpvietlvqlvisygkrfeaakqeksiidFsdlehyclailtaendkgerepseaarfyqeqfhevlvdeyqdtnlvqesilqlvtsgpeetgnlfmvgdvkqsiyrFRlaepllflskykrftesgegtgrkidlnknfrsradildstnflfkqlmggkigevdydeqaelklgaaypdndetetelllidnaeeletvqfeakaiakeirklisspfkvydgkkkthrniqyrdivillRsmpwapqimeelraqgipvyanltsgyfeavevavalsvlkvidnpyqdiplasvlrspivgadenelslirlenkkapyyeamkdylaagdrsdelyqklntfyghlqkwrafsknhsvseliwevyrdtkymdyvggmpggkqrqanlrvlydrarqyestafrglfrflrfiermqergddlgtarglseqedvvrlmtiHsskglefpvvfvaglgrnfNmmDlnksylldkelgfgtkyihpqlrisyptlpliamkkkmrrellseelrvlyvaltrakeklfligsckdhqkqlakwqasasqtdwllpefdryqartyldfigpalarhrdlhadisghparfavqmihsydllekserleairrgepvpgsfafdekareqlswtyphqevtqirtkqsvseilyrrpafmmkkgltaaekgtamhtvmqhiplshvpsieeaeqtvhrlyekellteeqkdaidieeivqffhteiggqligakwkdreipfslalpakeiypdaheadepllvqgiidclyetedglyllayksdrieaapilkkryetqiqlytkaveqiaktkvkgcalyffdgghiltl > 4cei_B interface=1052,1110, gaeflvgrsgsgktkliinsiqdelrrapfgkpiiflvpdqmtflmeyelaktpdmggmiraqvfsfsrlawrvlqhtggmsrpfltstgvqmllrklieehkqefkvyqkasdksgftaqvermltefkryclepedirrmseyrgervlseklhdlsilyqqmeksladqylhsedyltllaehiplaedikgahiyvdgfyqftpqefrvleqlmvhaehitfsltadkpsyerephelelfrmtgktyyrlhqkakelnlditykelsgterhtktpelahleaqyearpaipyaekqealtvmqaanrraelegiareihalvrekgyrykdvailarqpedykdmvkevfadyeipyfidgkasmlnhpliefirssldvlkgnwryeavfrcvktellfplnepkakvreqvdqlenyciaygikgdrwtkgdrfqyrrfvsldddfaqtdqeiemenmlndtrdwivpplfqlqkrmkkaktvqekaealyryleetdvplkldqerqraeddgriieaqqhqqawdaviqlleefvemmgddeisldlfqqmieagaesltfslippaldqvfvgnmdlsrmygtsctfvlgandgvlparpdengvlsdddrewlktigvelssggrerlldehfliymafsspsdrlyvsypiadaegktllpsmivkrleelfphhkerlltnepeqvsdeeqlmyvvnksvaqsftasqlrlwtreydisdvwwstynvlmseqdrlqskklfsslffrnevkqlersvsrqlygeriqgsvsrmetfnacpfshfashglhlkerqffkleapdigqlfhsslklisdrlrdekldwrdltkeqcelfsydaverlapklqkeillssnrhyyvkeklqkivtrvsgilsehakasgfvpiglelgfggkgplppltfqlkngctmelvgridrvdkaesskglllrivaykssdkgldlaevyyglalqmltyldlsithsadwlgmratpagvlyfhihdpmiqsnlplgldeieqeifkkfkmkglllgdqevvrlmdttlqegRsniinaglkkdgslrsdsaavgekefdlltkhvrrtfqeageqitdgrvsiepykmkNktpctycafksvcqfdesleeneyrplkaekdktilewikke
interface signature	HIDQERFFRRHND/RN

Estimated binding specificities ?

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# IC=11.623 IC/col=0.430 n_of_columns=27

specificity:

A |   0   7  24  24  24  24  24  24  24   9   0  24  24  24  73  24  24  24  24  24  24   7   0   0   0   0   0
C |   0  73  24  24  24  24  24  24  24  73   0  24  24  24   9  24  24  24  24  24  24   7   0   0   0   0   0
G |  96   9  24  24  24  24  24  24  24   7   0  24  24  24   7  24  24  24  24  24  24   7   0   0  96   0   0
T |   0   7  24  24  24  24  24  24  24   7  96  24  24  24   7  24  24  24  24  24  24  75  96  96   0  96  96

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updated Fri Dec 15 18:45:04 2023