3zvk_EFGH : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF VAPBC2 FROM RICKETTSIA FELIS BOUND TO A DNA FRAGMENT FROM THEIR PROMOTER
reference	Ortiz-Lombardia et al. 'Nucleic 40 3245 2012
source	RICKETTSIA FELIS
experiment	X-ray (resolution=2.50, R-factor=?)
structural superfamily	AbrB/MazE/MraZ-like;
reference complex	3zvk_G
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3zvk_E interface=6,8,10,11,15, nkakiFmNgQSqavRlpkefrfsvkevsviplgkgivlqplpnswkdvfqemaeiss > 3zvk_F interface=7,9,11,12,16, mnkakiFmNgQSqavRlpkefrfsvkevsviplgkgivlqplpnswkdvfqemaeissddifpegrkdlppqkrkyfe > 3zvk_G interface=6,8,10,11,15, nkakiFmNgQSqavRlpkefrfsvkevsviplgkgivlqplpnswkdvfqemaeissddifpegrkdlppqkrkyfe > 3zvk_H interface=7,9,11,12,16, mnkakiFmNgQSqavRlpkefrfsvkevsviplgkgivlqplpnswkdvfqemaeis
interface signature	FNQSR/FNQSR/FNQSR/FNQSR

Estimated binding specificities ?

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# IC=22.695 IC/col=0.946 n_of_columns=24

specificity:

A |  88   4   0  96   4  88   1  96   4   2  24  24  24  24  88   2   0  96   2  90   0  96   2   4
C |   4   2   0   0   2   4   0   0   2   2  24  24  24  24   2   2   0   0   0   2   0   0   2   2
G |   2  88   0   0   2   2   2   0   2   2  24  24  24  24   4  88   0   0   1   2   2   0   2   2
T |   2   2  96   0  88   2  93   0  88  90  24  24  24  24   2   4  96   0  93   2  94   0  90  88

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updated Fri Dec 15 18:20:32 2023