3zql_CD : 3D-footprint complex

structure name	DNA-BOUND FORM OF TETR-LIKE REPRESSOR SIMR
reference	Schumacher et al. 'Nucleic 39 9433 2011
source	STREPTOMYCES ANTIBIOTICUS
experiment	X-ray (resolution=2.99, R-factor=?)
structural superfamily	Tetracyclin repressor-like, C-terminal domain;Homeodomain-like;
reference complex	3zql_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3zql_C interface=44,45,55,56,57,59,60, vsiwmhpepagrrsarshrtlsrdqivraavkvadtegveaasMRrvaaelgagTMSlYYyvptkedlvelmvdevigetrlpdrpgpdwraaltlaanekralwlrhpwlatawrnghpvwgpnslrqqefvlgtlgvfdlqvdellsliglyngyvesfvrnevgwleearrtkvdmrewmrrsgpyaqqlvdsgeypmfarvlaetvaphmgpdqrfrsglerlldsigasld > 3zql_D interface=34,35,45,46,47,49,50, vsiwmhpeptlsrdqivraavkvadtegveaasMRrvaaelgagTMSlYYyvptkedlvelmvdevigetrlpdrpgpdwraaltlaanekralwlrhpwlatawrnghpvwgpnslrqqefvlgtlgvfdlqvdellsliglyngyvesfvrnevgwleearrtkvdmrewmrrsgpyaqqlvdsgeypmfarvlaetvaphmgpdqrfrsglerlldsigasld
interface signature	MRTMSYY/MRTMSYY

Estimated binding specificities ?

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# IC=15.547 IC/col=0.972 n_of_columns=16

specificity:

A |   0   4   7   7  96   0   1  24   1   0   0  86   1  65  96  74
C |   0  88   8  11   0  96   1  24  91   0   0   1  90   4   0   9
G |   0   3  78   7   0   0  90  24   3  96   0   6   4  26   0   8
T |  96   1   3  71   0   0   4  24   1   0  96   3   1   1   0   5

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updated Fri Dec 15 18:20:16 2023