3zql_AB : 3D-footprint complex

structure name	DNA-BOUND FORM OF TETR-LIKE REPRESSOR SIMR
reference	Schumacher et al. 'Nucleic 39 9433 2011
source	STREPTOMYCES ANTIBIOTICUS
experiment	X-ray (resolution=2.99, R-factor=?)
structural superfamily	Tetracyclin repressor-like, C-terminal domain;Homeodomain-like;
reference complex	3zql_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3zql_A interface=44,45,55,56,57,59,60, vsiwmhpepagrrsarshrtlsrdqivraavkvadtegveaasMRrvaaelgagTMSlYYyvptkedlvelmvdevigetrlpdrpgpdwraaltlaanekralwlrhpwlatawrnghpvwgpnslrqqefvlgtlgvfdlqvdellsliglyngyvesfvrnevgwleearrtkvdmrewmrrsgpyaqqlvdsgeypmfarvlaetvaphmgpdqrfrsglerlldsigasld > 3zql_B interface=34,35,45,46,47,49,50, vsiwmhpeptlsrdqivraavkvadtegveaasMRrvaaelgagTMSlYYyvptkedlvelmvdevigetrlpdrpgpdwraaltlaanekralwlrhpwlatawrnghpvwgpnslrqqefvlgtlgvfdlqvdellsliglyngyvesfvrnevgwleearrtkvdmrewmrrsgpyaqqlvdsgeypmfarvlaetvaphmgpdqrfrsglerlldsigasld
interface signature	MRTMSYY/MRTMSYY

Estimated binding specificities ?

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# IC=14.684 IC/col=0.979 n_of_columns=15

specificity:

A |   0   3   3   4  96   0   3  24   3   0   0  86   6  80  86
C |   0  87   3   3   0  96   3  24  86   0   0   4  80   3   3
G |   0   3  87   3   0   0  87  24   3  96   0   3   6  10   3
T |  96   3   3  86   0   0   3  24   4   0  96   3   4   3   4

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updated Fri Dec 15 18:20:01 2023