interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF A RESTRICTION ENZYME PABI IN COMPLEX WITH DNA
(Putative uncharacterized protein)
referenceMiyazono et al. 'Nat 5 3178 2014
sourcePyrococcus abyssi
experimentX-ray (resolution=3.00, R-factor=0.170)
structural superfamilyTransglycosidases;
sequence familyRPab1 restriction endonuclease;
multimeric complexes3waz_AB 5iff_AB 6l2n_AB 6l2o_AB 6m3l_AB
reference complex5iff_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureTKRKEQKAQRAVQMYR

Estimated binding specificities ?

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# IC=4.242 IC/col=0.707 n_of_columns=6 specificity:   
A |   0   0  24  24   0  56
C |   0   0  24  24  96  13
G |   0  96  24  24   0  13
T |  96   0  24  24   0  14
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updated Mon Dec 18 09:33:15 2023