interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF DNA-GLYCOSYLASE BOUND TO DNA CONTAINING 5- HYDROXYURACIL
(Probable formamidopyrimidine-DNA glycosylase)
referenceWallace et al.
sourceAcanthamoeba polyphaga mimivirus
experimentX-ray (resolution=2.10, R-factor=0.218)
structural superfamilyN-terminal domain of MutM-like DNA repair proteins;S13-like H2TH domain;
sequence familyFormamidopyrimidineDNA glycosylase N; FormamidopyrimidineDNA glycosylase H2;
reference complex3vk8_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureLMRFSKNR

Estimated binding specificities ?

readout + contactlogo
# IC=6.633 IC/col=0.948 n_of_columns=7 specificity:   
A |   9  67   0  67   0   0   0
C |  11   9   0   9  96   0   0
G |   9   9  96   9   0  96   0
T |  67  11   0  11   0   0  96
scan!

home
updated Mon Dec 18 09:27:31 2023