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structure nameCRYSTAL STRUCTURE OF RAP1/DNA COMPLEX
(DNA-binding protein RAP1)
referenceLe Bihan et al. 'Nucleic 40 3197 2012
sourceSaccharomyces cerevisiae
experimentX-ray (resolution=2.95, R-factor=0.198)
structural superfamilyHomeodomain-like;
sequence familyRap1, DNAbinding; Myblike DNAbinding domain;
multimeric complexes1ign_AB
redundant complexes4gfb
reference complex1ign_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKTHNSRHRYKNRDRKTRTPN

Estimated binding specificities ?

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# IC=14.890 IC/col=1.064 n_of_columns=14 specificity:   
A |   6   0   0   0   0   6   4   4   0   0   0   4   0   6
C |   4   0   0   0   0   4   4   4   0   0   0   4   5   4
G |   4  96  96   0  96   4  82   6  96  96  91   6  87   4
T |  82   0   0  96   0  82   6  82   0   0   5  82   4  82
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updated Mon Dec 18 09:20:48 2023