1ign_AB : 3D-footprint complex

structure name	DNA-BINDING DOMAIN OF RAP1 IN COMPLEX WITH TELOMERIC DNA SITE
reference	Giraldo et al.
source	Saccharomyces cerevisiae
experiment	X-ray (resolution=2.25, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	1ign_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1ign_A interface=1,26,42,43,45,46,49,51,87,149,152,153,156,157,181,183,184,186, KasftdeedefildvvrknptrrttHtlydeishyvpnhtgNSiRHrfRvYlskrleyvyevdkfgklvrdddgnliktkvlppsiKrkfsadedytlaiavkkqfyrdlfqidpdtgrslirtqsrrgpiareffkhfaeehaahteNawRDrfRKfllaygiddyisyyeaeepmknlTpTPgNyns > 1ign_B interface=1,26,42,43,45,46,49,51,87,149,152,153,156,157,181,183,184,186, KasftdeedefildvvrknptrrttHtlydeishyvpnhtgNSiRHrfRvYlskrleyvyevdkfgklvrdddgnliktkvlppsiKrkfsadedytlaiavkkqfyrdlfqidpdtgrslirtqsrrgpiareffkhfaeehaahteNawRDrfRKfllaygiddyisyyeaeepmknlTpTPgNyns
interface signature	KHNSRHRYKNRDRKTTPN/KHNSRHRYKNRDRKTTPN

Estimated binding specificities ?

readout + contact

# IC=33.965 IC/col=1.096 n_of_columns=31

specificity:

A |  88   0  96   0   0   0  86   0  90   0  96   0   0  91  24  24   1   0   0   0   0   8   6   1   0   0   0   1   0   6   3
C |   1  96   0  96  96  96   6  94   4  96   0  96  96   3  24  24   1   0   0   0   0   1   3   3   0   0   0  15   0   1   4
G |   1   0   0   0   0   0   1   1   1   0   0   0   0   1  24  24   3  96  96   0  96   3  86   5  31  96  96   1  96   5  88
T |   6   0   0   0   0   0   3   1   1   0   0   0   0   1  24  24  91   0   0  96   0  84   1  87  65   0   0  79   0  84   1

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updated Fri Dec 15 09:14:05 2023