3qfq_ABE : 3D-footprint complex

structure name	ASYMMETRIC ASSEMBLY OF MERKEL CELL POLYOMAVIRUS LARGE T-ANTIGEN ORIGIN BINDING DOMAINS AT THE VIRAL ORIGIN
reference	Harrison et al. J.Mol.Biol. 409 529 2011
source	Merkel cell polyomavirus
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	Origin of replication-binding domain, RBD-like;
reference complex	3qfq_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3qfq_A interface=21,22,23,24,72, tpvptdfpidlsdylshavySNKTvscfaiyttsdkaielydkiekfkvdfksrhacelgcillfitlskhRvsaiknfcstfctisflickgvnkmpemynnlckppykllqenkpll > 3qfq_B interface=21,22,23,24,72, tpvptdfpidlsdylshavySNKTvscfaiyttsdkaielydkiekfkvdfksrhacelgcillfitlskhRvsaiknfcstfctisflickgvnkmpemynnlckppykllqenkplln > 3qfq_E interface=19,20,21,22,70, vptdfpidlsdylshavySNKTvscfaiyttsdkaielydkiekfkvdfksrhacelgcillfitlskhRvsaiknfcstfctisflickgvnkmpemynnlckppykllqenkpll
interface signature	SNKTR/SNKTR/SNKTR

Estimated binding specificities ?

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# IC=19.963 IC/col=0.907 n_of_columns=22

specificity:

A |   0  76   0   0   0   0  24   0   8   0   0   0   0  24  24  24  96   0   4   0  12   0
C |   4   4   0   0  96   0  24   0   0   0   0  96   0  24  24  24   0   0  16  96   4  96
G |  12  12  88  88   0   0  24  96  88  84  96   0   0  24  24  24   0  96  72   0  16   0
T |  80   4   8   8   0  96  24   0   0  12   0   0  96  24  24  24   0   0   4   0  64   0

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updated Fri Dec 15 16:24:54 2023