3q5f_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE SALMONELLA TRANSCRIPTIONAL REGULATOR SLYA IN COMPLEX WITH DNA
reference	Duguid et al. J.Biol.Chem. 286 22178 2011
source	Salmonella enterica
experiment	X-ray (resolution=2.96, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	3q5f_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3q5f_A interface=58,59,60,61,63,64,85, esplgsdlarlvriwralidhrlkpleltqthwvtlhnihqlppdqsqiqlakaigiEQPSlVRtldqledkglisrqtcasdrRakrikltekaepliaemeevihktrgeilagisseeiellikliaklehnimelhs > 3q5f_B interface=15,57,58,59,60,62,63,84, splgsdlarlvriwRalidhrlkpleltqthwvtlhnihqlppdqsqiqlakaigiEQPSlVRtldqledkglisrqtcasdrRakrikltekaepliaemeevihktrgeilagisseeiellikliaklehnimelhs
interface signature	EQPSVRR/REQPSVRR

Estimated binding specificities ?

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# IC=17.449 IC/col=0.872 n_of_columns=20

specificity:

A |  90   2  24  24   2   0  96   2   0   0   0   0   2   0  88  65  24  24   2  88
C |   2   4  24  24   2   0   0   2  96   0   0   0  80   0   2  10  24  24  12   4
G |   2   2  24  24   2   0   0  90   0   0   0  96  12   0   4   9  24  24   2   2
T |   2  88  24  24  90  96   0   2   0  96  96   0   2  96   2  12  24  24  80   2

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updated Fri Dec 15 16:24:41 2023