| structure name | CRYSTAL STRUCTURE OF THE SALMONELLA TRANSCRIPTIONAL REGULATOR SLYA IN COMPLEX WITH DNA (Transcriptional regulator slyA) |
| reference | Duguid et al. J.Biol.Chem. 286 22178 2011 |
| source | Salmonella enterica |
| experiment | X-ray (resolution=2.96, R-factor=0.219) |
| structural superfamily | "Winged helix" DNA-binding domain; |
| sequence family | MarR family; |
| multimeric complexes | 3q5f_AB |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | EQPSVRR |
Estimated binding specificities ?
| readout + contact |  |
A | 78 0 6 0 96 78 24 24 78 6 C | 6 0 78 0 0 6 24 24 6 6 G | 6 96 6 0 0 6 24 24 6 6 T | 6 0 6 96 0 6 24 24 6 78scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: SLYA | ||
| TTAGCAAGCTAA | PubMed | 3q5f_A(9.12e-04) |
Dendrogram of similar interfaces ?
matrix format--ET--RGTCTGSTRG------------KT-- L +-----------------------------6q2b_B +-1 ------RGSTRTSTHG------------RA-- L +-2 +-----------------------------3zpl_B ! ! NT--KTPTQGSCNTKA--------------RT +-3 +-----------------------------5bmz_B ! ! --NGLTKTPTSTTT------RT------RT-- L +-4 +-----------------------------7el3_B ! ! ----TT--PTTCSTNT------------RT-- L +-5 +-----------------------------4lln_I ! ! ----STKGSTVASTNT--KTRC------RT-- L +-6 +-----------------------------7dvv_A ! ! ------RGTCTA--RGNT----------RT-- L +-7 +-----------------------------4fx4_B ! ! ----LTRTPTNAVT--------------RT-- L +-8 +-----------------------------6c2s_C ! ! ----TCLA--TCTTTT------------RT-- L +-9 +-----------------------------6jbx_A ! ! ----ST--PTTCSTQC----RA---------- L +-10 +-----------------------------1ddn_B ! ! ----STQTPTPGTTRG--------------HT L +-11 +-----------------------------5xxp_A ! ! --------KGTA--TA----RG---------- L +-12 +-----------------------------1xsd_A ! ! --------------RC--YG----KT------ +-13 +-----------------------------2acj_B ! ! ------------------YGRG---------- +-14 +-----------------------------4wcg_A ! ! ----SGRGPT--SGRG---------------- L +-15 +-----------------------------7bhy_A ! ! --------------------------KG---- +-16 +-----------------------------7o4j_W ! ! --------TTHT--KG------RC-------- L -17 +-----------------------------7b0c_A ! ----HT--STATSTRG---------------- L +-----------------------------5lej_A |
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updated Tue Dec 19 08:03:45 2023