| structure name | CRYSTAL STRUCTURE OF A MUTANT OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS IN A CLOSED TERNARY COMPLEX WITH DNA AND DDCTP (DNA polymerase I) |
| reference | Diederichs et al. Chembiochem 12 1574 2011 |
| source | Thermus aquaticus |
| experiment | X-ray (resolution=1.74, R-factor=0.171) |
| structural superfamily | DNA/RNA polymerases;Ribonuclease H-like; |
| sequence family | DNA polymerase family A; Taq polymerase, exonuclease; |
| redundant complexes | 3rrh 3m8s 4ktq 3t3f 3ojs 3lwm 3ktq 1qsy 3rrg 3m8r 1qss 3po5 1tau 3lwl 1qtm 3po4 3rr8 3rr7 2ktq 3oju |
| reference complex | 6fbc_A |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | KTRNNTFYMQH |
Estimated binding specificities ?
| readout + contact |  |
A | 8 24 57 6 0 15 C | 6 24 6 83 0 57 G | 76 24 25 6 96 12 T | 6 24 8 1 0 12scan! |
Dendrogram of similar interfaces ?
matrix format----------------------KC----------RG--NGNGTGFG--YGMGSA----------QG--HG L +-3py8_A +-1 ----------------------KT----------RG--NGNTAAYA--YAIASTYTNARTFANAQA--HG L +-----2 +-3pv8_D ! ! LCNGKGYGMGRCEG------------SGHGVC-------------------------------------- +-------------3 +---1kln_A ! ! ------------------------KT--------RT--NG--------YA--------------QA---- --4 +---------1x9m_A ! --------------ATYTDGKG----------RCRCYC--------TTYT----------------HT-- +-----------------------1msw_D |
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updated Mon Dec 18 08:47:02 2023