3oqo_AC : 3D-footprint complex

structure name	CCPA-HPR-SER46P-SYN CRE
reference	schumacher et al. 'Nucleic 39 2931 2011
source	BACILLUS SUBTILIS
experiment	X-ray (resolution=2.97, R-factor=?)
structural superfamily	Periplasmic binding protein-like I;lambda repressor-like DNA-binding domains;
reference complex	3oqm_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3oqo_A interface=5,15,16,17,20,21,28,52,55,56, mnitIydvareanvSMAtvSRvvngnpNvkpttrkkvleaierlgyrpnavArgLAskktttvgviipdissifyselargiediatmykyniilsnsdqnmekelhllntmlgkqvdgivfmggnitdehvaefkrspvpivlaasveeqeetpsvaidyeqaiydavkllvdkghtdiafvsgpmaepinrskklqgykraleeanlpfneqfvaegdytydsglealqhlmsldkkptailsatdemalgiihaaqdqglsipedldiigfdntrlslmvrpqlstvvqptydigavamrlltklmnkepveehivelphrielrkstka > 3oqo_C interface=5,15,16,17,20,21,28,52,55,56, mnitIydvareanvSMAtvSRvvngnpNvkpttrkkvleaierlgyrpnavArgLAskktttvgviipdissifyselargiediatmykyniilsnsdqnmekelhllntmlgkqvdgivfmggnitdehvaefkrspvpivlaasveeqeetpsvaidyeqaiydavkllvdkghtdiafvsgpmaepinrskklqgykraleeanlpfneqfvaegdytydsglealqhlmsldkkptailsatdemalgiihaaqdqglsipedldiigfdntrlslmvrpqlstvvqptydigavamrlltklmnkepveehivelphrielrkstk
interface signature	ISMASRNALA/ISMASRNALA

Estimated binding specificities ?

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# IC=10.447 IC/col=0.746 n_of_columns=14

specificity:

A |   0   0  24  36  56  89   0   0  16  24  24  79   0  96
C |   0   0  24  39  11   0  96   0  46  24  24   3  96   0
G |   0  96  24  15  23   7   0  96   9  24  24   8   0   0
T |  96   0  24   6   6   0   0   0  25  24  24   6   0   0

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updated Fri Dec 15 16:20:10 2023