structure name | STRUCTURE OF CCPA-HPR-SER46P-ACKA2 COMPLEX (CATABOLITE CONTROL PROTEIN A) |
reference | Schumacher et al. 'Nucleic 39 2931 2011 |
source | BACILLUS SUBTILIS |
experiment | X-ray (resolution=2.96, R-factor=0.216) |
structural superfamily | Periplasmic binding protein-like I;lambda repressor-like DNA-binding domains; |
sequence family | Bacterial regulatory proteins, lacI fami; Periplasmic binding proteins and sugar b; |
multimeric complexes | 3oqm_AC 3oqn_AC 3oqo_AC |
redundant complexes | 3oqn_A 3oqo_C |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | IYSMASRNALA |
Estimated binding specificities ?
readout + contact |
A | 0 0 57 13 96 96 0 C | 0 0 13 13 0 0 96 G | 0 96 13 13 0 0 0 T | 96 0 13 57 0 0 0scan! |
Related DNA sequences reported in the literature ?
site | source | matches (E-value) |
---|---|---|
term: CCPA | ||
ATAAAGCGTTTACA | PubMed | 3oqm_AC(9.55e-03), 3oqn_AC(7.76e-08), 3oqo_AC(6.22e-04), ... (total=4) |
ATAATTAATATAACAACAAA | PubMed | 3oqm_C(7.60e-03) |
TGTAAGCCCTAACA | PubMed | 3oqm_AC(1.36e-03), 3oqn_AC(3.65e-13), 3oqo_AC(2.21e-04), ... (total=4) |
Dendrogram of similar interfaces ?
matrix formatIT--ST--ATTTSTRG----VTAGLCAC +-----------------------------1rzr_C ! ITYTSGMTAA--STRG--NT--AGLCAT L --3 +3oqm_C ! +----------------1 ----SG--TC------RG------LCKA L +------------2 +1jft_A ! LT----ITTGTTST----DCIT--LCRT L +----------------7ce1_D |
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updated Tue Dec 19 07:57:53 2023