3oqm_AC : 3D-footprint complex

structure name	STRUCTURE OF CCPA-HPR-SER46P-ACKA2 COMPLEX
reference	Schumacher et al. 'Nucleic 39 2931 2011
source	BACILLUS SUBTILIS
experiment	X-ray (resolution=2.96, R-factor=?)
structural superfamily	Periplasmic binding protein-like I;lambda repressor-like DNA-binding domains;
reference complex	3oqm_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3oqm_A interface=15,17,20,21,28,52,55,56, mnitiydvareanvSmAtvSRvvngnpNvkpttrkkvleaierlgyrpnavArgLAskktttvgviipdissifyselargiediatmykyniilsnsdqnmekelhllntmlgkqvdgivfmggnitdehvaefkrspvpivlaasveeqeetpsvaidyeqaiydavkllvdkghtdiafvsgpmaepinrskklqgykraleeanlpfneqfvaegdytydsglealqhlmsldkkptailsatdemalgiihaaqdqglsipedldiigfdntrlslmvrpqlstvvqptydigavamrlltklmnkepveehivelphrielrkstk > 3oqm_C interface=5,6,15,16,17,20,21,28,52,55,56, mnitIYdvareanvSMAtvSRvvngnpNvkpttrkkvleaierlgyrpnavArgLAskktttvgviipdissifyselargiediatmykyniilsnsdqnmekelhllntmlgkqvdgivfmggnitdehvaefkrspvpivlaasveeqeetpsvaidyeqaiydavkllvdkghtdiafvsgpmaepinrskklqgykraleeanlpfneqfvaegdytydsglealqhlmsldkkptailsatdemalgiihaaqdqglsipedldiigfdntrlslmvrpqlstvvqptydigavamrlltklmnkepveehivelphrielrkstk
interface signature	SASRNALA/IYSMASRNALA

Estimated binding specificities ?

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# IC=11.717 IC/col=0.837 n_of_columns=14

specificity:

A |   0   0  52  17  78  96   0   0  24  24  24  96   0  96
C |   0   0  17  17   0   0  96   0  24  24  24   0  96   0
G |   0  96  19  19   8   0   0  96  24  24  24   0   0   0
T |  96   0   8  43  10   0   0   0  24  24  24   0   0   0

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updated Fri Dec 15 16:19:34 2023