3mln_AB : 3D-footprint complex

structure name	DNA BINDING DOMAIN OF EARLY B-CELL FACTOR 1 (EBF1) BOUND TO DNA (CRYSTAL FORM II)
reference	Grosschedl et al. 'Genes 24 2270 2010
source	Mus musculus
experiment	X-ray (resolution=2.40, R-factor=?)
reference complex	3mln_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3mln_A interface=29,31,32,129,138,168,170,202,203,204,205, gvldantaaqsgvglarahfekqppsnlRkSNffhfvlalydrqgqpveiertafvgfvekekeansektnngihyrlqllysngirteqdfyvrlidsmtkqaivyegqdknpemcrvlltheimcsRccdkkscgNrnetpsdpviidrfflkfflkcnqnclknAgNprdmrrfqvvvsttvnvdghvlavsdnmfvhNNSKh > 3mln_B interface=29,31,32,129,138,168,170,202,203,204,205, gvldantaaqsgvglarahfekqppsnlRkSNffhfvlalydrqgqpveiertafvgfvekekeansektnngihyrlqllysngirteqdfyvrlidsmtkqaivyegqdknpemcrvlltheimcsRccdkkscgNrnetpsdpviidrfflkfflkcnqnclknAgNprdmrrfqvvvsttvnvdghvlavsdnmfvhNNSKhgenlyfq
interface signature	RSNRNANNNSK/RSNRNANNNSK

Estimated binding specificities ?

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# IC=13.894 IC/col=0.926 n_of_columns=15

specificity:

A |   5  24  24   5  11   0   0   0  90   0   0   0   0  91  73
C |  16  24  24   7   5  96  96  96   0   0   0   0   0   0   5
G |   8  24  24   5   7   0   0   0   5   0  96  96  96   5  13
T |  67  24  24  79  73   0   0   0   1  96   0   0   0   0   5

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updated Fri Dec 15 16:06:18 2023