3jxd_LR : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE P22 C2 REPRESSOR PROTEIN IN COMPLEX WITH SYNTHETIC OPERATOR 9C IN THE PRESENCE OF RB+
reference	Koudelka et al. J.Mol.Biol. 396 1145 2010
source	Enterobacteria phage P22
experiment	X-ray (resolution=2.10, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	2r1j_L
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3jxd_L interface=19,29,30,31,32,34,35,38,40,41, tqlmgerirarrkklkirQaalgkmvgvSNVAiSQweRsETepngenllalskalqcspdyllkgd > 3jxd_R interface=19,29,30,31,32,34,35,38,40,41, tqlmgerirarrkklkirQaalgkmvgvSNVAiSQweRsETepngenllalskalqcspdyllkgd
interface signature	QSNVASQRET/QSNVASQRET

Estimated binding specificities ?

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# IC=9.908 IC/col=0.708 n_of_columns=14

specificity:

A |   7   7  96  96   5  24  24  24  24  11   0   0  90  79
C |  11   5   0   0   0  24  24  24  24  22   0   0   1  11
G |   5   5   0   0  90  24  24  24  24   5   0   0   0   0
T |  73  79   0   0   1  24  24  24  24  58  96  96   5   6

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updated Fri Dec 15 15:07:30 2023