3jri_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF FIS BOUND TO 27 BP NON CONSENSUS SEQUENCE DNA F23
reference	Johnson et al. 'Genes 24 814 2010
source	Escherichia coli
experiment	X-ray (resolution=3.11, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	5ds9_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3jri_A interface=68,77,78,82,83, sdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgtlRKklkkygmn > 3jri_B interface=75,84,85,89,90, mfeqrvnsdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgtlRKklkkygmn
interface signature	TNRRK/TNRRK

Estimated binding specificities ?

contact

# IC=5.773 IC/col=0.340 n_of_columns=17

specificity:

A |   3   0  24  24  49  24  24  24  24  24  24  24  17  24  15   0  85
C |   5   0  24  24  14  24  24  24  24  24  24  24  53  24   0  96   5
G |   3  96  24  24  19  24  24  24  24  24  24  24  21  24  81   0   3
T |  85   0  24  24  14  24  24  24  24  24  24  24   5  24   0   0   3

scan!

home
updated Fri Dec 15 15:06:03 2023