3ikt_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A REX-FAMILY REPRESSOR/DNA/NAD+ COMPLEX FROM THERMUS AQUATICUS
reference	McLaughlin et al. Mol.Cell 38 563 2010
source	Thermus thermophilus HB27
experiment	X-ray (resolution=2.26, R-factor=?)
structural superfamily	NADP-binding Rossmann-fold domains;"Winged helix" DNA-binding domain;
reference complex	3ikt_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3ikt_A interface=44,45,47,48,51,52, gmkvpeaaisrlitylrileeleaqgvhrtsseqlgelaqvtaFQvRKdlSYfgsygtgytvpvlkrelrhilglnrkwglcivgmgrlgsaladypgfgesfelrgffdvdpekvgrpvrggviehvdllpqrvpgrieialltvpreaaqkaadllvaagikgilnfapvvlevpkevavenvdflagltrlsfailnpkwr > 3ikt_B interface=43,44,46,47,50,51,58, mkvpeaaisrlitylrileeleaqgvhrtsseqlgelaqvtaFQvRKdlSYfgsygtRgvgytvpvlkrelrhilglnrkwglcivgmgrlgsaladypgfgesfelrgffdvdpekvgrpvrggviehvdllpqrvpgrieialltvpreaaqkaadllvaagikgilnfapvvlevpkevavenvdflagltrlsfailnpkwr
interface signature	FQRKSY/FQRKSYR

Estimated binding specificities ?

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# IC=12.154 IC/col=0.675 n_of_columns=18

specificity:

A |   3   0   3   3  85  24  24  24  24  24  24   3   0  96   0  87   7   7
C |   3   0   5   1   3  24  24  24  24  24  24  17  96   0  96   3   7  81
G |   3  96   3  92   5  24  24  24  24  24  24   3   0   0   0   3  74   5
T |  87   0  85   0   3  24  24  24  24  24  24  73   0   0   0   3   8   3

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updated Fri Dec 15 14:57:41 2023