3gz6_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF SHEWANELLA ONEIDENSIS NRTR COMPLEXED WITH A 27MER DNA
reference	Huang et al. Structure 17 939 2009
source	Shewanella oneidensis
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	Nudix;
reference complex	3gz6_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3gz6_A interface=172,174,175,177,178,198,216, qlltvdavlftyhdqqlkvllvqrsnhpflglwglpggfidetcdesleqtvlrklaektavvppyieqlctvgnnsrdargwsvtvcytalmsyqacqiqiasvsdvkwwpladvlqmplafdhlqlieqarerltqkalyslvpgfalsepftlpelqhvhevllgkpiQgKSfRRrveqadllidtglkrtergRpanlyclkpdtasyrflRnle > 3gz6_B interface=172,174,175,177,178,198,199,216, qlltvdavlftyhdqqlkvllvqrsnhpflglwglpggfidetcdesleqtvlrklaektavvppyieqlctvgnnsrdargwsvtvcytalmsyqacqiqiasvsdvkwwpladvlqmplafdhlqlieqarerltqkalyslvpgfalsepftlpelqhvhevllgkpiQgKSfRRrveqadllidtglkrtergRPanlyclkpdtasyrflRnle
interface signature	QKSRRRR/QKSRRRPR

Estimated binding specificities ?

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# IC=15.704 IC/col=0.785 n_of_columns=20

specificity:

A |   0  74  24   3   0   0   0   0  24  24  24  96   0  96   0  60  24  10  87   7
C |   0  10  24   7   0   0  96   0  24  24  24   0   0   0  96  10  24   7   3   7
G |   0   3  24   8  96   0   0   0  24  24  24   0  96   0   0  12  24   7   3   7
T |  96   9  24  78   0  96   0  96  24  24  24   0   0   0   0  14  24  72   3  75

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updated Fri Dec 15 14:45:44 2023