3fdq_AB : 3D-footprint complex

structure name	RECOGNITION OF AT-RICH DNA BINDING SITES BY THE MOGR REPRESSOR
reference	Higgins et al. Structure 17 769 2009
source	Listeria monocytogenes
experiment	X-ray (resolution=1.75, R-factor=?)
reference complex	3fdq_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3fdq_A interface=91,111,114,115,118,135,137, seirkllqeikkqvdnpgnsstteikkmaseagideqtaeeiyhlltefyqaveehggiekymhsniswlkielellsacyqiailedmkVldisemlslndlrifpktpSqlQNtyYklkkeliqvedipknkPgRkrk > 3fdq_B interface=91,111,114,115,118,135,137, seirkllqeikkqvdnpgnsstteikkmaseagideqtaeeiyhlltefyqaveehggiekymhsniswlkielellsacyqiailedmkVldisemlslndlrifpktpSqlQNtyYklkkeliqvedipknkPgRkrk
interface signature	VSQNYPR/VSQNYPR

Estimated binding specificities ?

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# IC=13.168 IC/col=1.013 n_of_columns=13

specificity:

A |   0   0   1   0   4  14  12  66  84  96  96  96  96
C |   0   0  12   0   4   8  10  14   4   0   0   0   0
G |   0   0   0   0   4  12   8  12   4   0   0   0   0
T |  96  96  83  96  84  62  66   4   4   0   0   0   0

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updated Fri Dec 15 14:24:46 2023