3e54_AB : 3D-footprint complex

structure name	ARCHAEAL INTRON-ENCODED HOMING ENDONUCLEASE I-VDI141I COMPLEXED WITH DNA
reference	Stoddard et al. 'Nucleic 36 6988 2008
source	Vulcanisaeta distributa
experiment	X-ray (resolution=2.50, R-factor=?)
structural superfamily	Homing endonucleases;
reference complex	3e54_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3e54_A interface=18,20,22,24,26,28,29,34,36,42,60,62,64,65,67,76,139,141, eedfkegyilgfieaegSfSvSiKfQrDVfggvRlDpvfsiTqknrevleaikehlgigRiMeKAgQpntyvyvvDnfnelvklinflnkyadfmivkkrqflmfreianglvngehlhinglkrlvklayeltkeseKgYrkydlnhvlsiidkwdlg > 3e54_B interface=18,20,22,24,26,28,29,34,36,42,60,62,64,65,67,76,139,141, eedfkegyilgfieaegSfSvSiKfQrDVfggvRlDpvfsiTqknrevleaikehlgigRiMeKAgQpntyvyvvDnfnelvklinflnkyadfmivkkrqflmfreianglvngehlhinglkrlvklayeltkeseKgYrkydlnhvlsiidkwdlg
interface signature	SSSKQDVRDTRMKAQDKY/SSSKQDVRDTRMKAQDKY

Estimated binding specificities ?

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# IC=25.014 IC/col=1.137 n_of_columns=22

specificity:

A |   0   0   0   3   0   0  72   3   0   0   0  96  96   0  86   3  88   0   3   0  96   0
C |   0   0   0  26  96   3   7  88  96   0   0   0   0   0   0   7   0   0   6  96   0   0
G |   0   0  96  61   0   7  10   3   0   0   0   0   0  96   7  80   8  96  11   0   0  96
T |  96  96   0   6   0  86   7   2   0  96  96   0   0   0   3   6   0   0  76   0   0   0

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updated Fri Dec 15 14:23:58 2023