structure name | ARCHAEAL INTRON-ENCODED HOMING ENDONUCLEASE I-VDI141I COMPLEXED WITH DNA (RRNA intron-encoded endonuclease) |
reference | Stoddard et al. 'Nucleic 36 6988 2008 |
source | Vulcanisaeta distributa |
experiment | X-ray (resolution=2.50, R-factor=0.231) |
structural superfamily | Homing endonucleases; |
sequence family | LAGLIDADG endonuclease; |
multimeric complexes | 3e54_AB |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | SSSKQDVRDTRMKAQDKY |
Estimated binding specificities ?
readout + contact |
A | 0 96 96 0 69 8 88 0 8 0 96 0 C | 0 0 0 0 8 11 0 0 8 96 0 0 G | 0 0 0 96 8 69 8 96 11 0 0 96 T | 96 0 0 0 11 8 0 0 69 0 0 0scan! |
Dendrogram of similar interfaces ?
matrix formatSANCSCKG--LT--------------DAECTG------RC--KGST------------DAQA----QCNT L +-------2ex5_A +------------14 CA--QGVT--RG--DCYA--------RT--FA------RG------RGNTDTMCEA--------KT---- L ! ! +-5a74_B ! +----11 SAIAQA--------SC------RG--KG--TA----YC----------ST--VA--------KTTT---- L ! +-2vbl_B ! SGIGQAKG--NC--SC------RG--QG--TA----YCAT--------SC--VCKGRG------TT---- L ! +6fb0_A ! +-1 STITQAKG--RG--STNT----QT--ST--TC------YT--------SC--VCDTRGST--KGTG---- L ! +-2 +3mxb_B ! ! ! STITQANG--NT--SC------RG--RG--TC------RG------------VCQT--------TT---- L +---16 +-10 +2xe0_A ! ! ! ! SAYCLCIT--RGDCYA------QG------IG----NARG----RG----DTIC--RG------------ L ! ! ! ! +2fld_B ! ! +----------12 +-3 SAYCKTITPTRGDCYA--------------IG----NARG----RT----DTICDG--IA---------- L ! ! ! ! +3fd2_A ! ! ! ! STITQA--------ST------RG--RG--TC----YCRG--------SG--VAQT--------TC---- L ! ! ! +--3mxa_A ! ! ! ST--NAVT--HG--TCNA----AT--LCYCAT------YG--NA----SADCTCKTKGSA---------- L ! ! ! +4lq0_A ! +-----15 ! SA--RGRG--NT--KTST----ST--EC--TA--------------ST----AT--KG------------ L ! ! ! +6bd0_A ! ! +--9 +-4 SA--RARG--RG--KT----------EC--KG--------------ST----ATRGRG------------ L -17 ! ! ! +-6 +6uw0_B ! ! ! ! ! ! STIGRGRG--------MC----LT--EC--KG------TT------NA------MGRTSC---------- L ! ! ! +-7 +5t2n_A ! ! ! ! STMG----------KGYC----RT----RGSA------FC------------STQTRGEC---------- L ! +---------13 ! +5esp_A ! ! +-5 SALTRGRG--NT--KT------ST--EC--TAHAKA----------ST--------KGTC---------- L ! ! +6uwj_A ! ! CGRGSTTT----------KARGQT--FAQGNG----------HC--SC----LAQGRGQA---------- L ! ! +4yit_A ! +---8 --MGTASG--------RA----ST--RGRG----------------------DTRGRCEC---------- L ! +6bce_A ! --YT------------------RGSGECRGVTTG------QG--VG--------EARGSC---------- L +--------------------------2vs7_A |
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updated Tue Dec 19 07:16:05 2023