structure name | CRYSTAL STRUCTURE OF NOTI RESTRICTION ENDONUCLEASE BOUND TO COGNATE DNA (NotI restriction endonuclease) |
reference | Stoddard et al. Structure 16 558 2008 |
source | Nocardia otitidiscaviarum |
experiment | X-ray (resolution=2.50, R-factor=0.226) |
multimeric complexes | 3c25_AB |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | EESDHENNR |
Estimated binding specificities ?
readout + contact |
A | 0 0 0 0 0 0 0 24 9 24 24 24 24 24 9 C | 96 0 96 0 0 96 96 24 59 24 24 24 24 24 57 G | 0 96 0 86 96 0 0 24 9 24 24 24 24 24 21 T | 0 0 0 10 0 0 0 24 19 24 24 24 24 24 9scan! |
Related DNA sequences reported in the literature ?
site | source | matches (E-value) |
---|---|---|
term: NOTI | ||
GCGGCCGC | PubMed | 3c25_B(3.58e-07), 3c25_AB(8.58e-13) |
GGCCGC | PubMed | 3c25_B(2.42e-07), 3c25_AB(3.26e-08) |
NCGGCCGN | PubMed | 3c25_AB(1.49e-05) |
CGCGGCCGC | PubMed | 3c25_B(5.39e-09), 3c25_AB(1.22e-15) |
GCTGCCGC | PubMed | 3c25_B(5.63e-04), 3c25_AB(3.50e-08) |
GCGGCCGCG | PubMed | 3c25_B(5.39e-09), 3c25_AB(1.22e-15) |
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updated Tue Dec 19 07:12:24 2023