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structure nameCRYSTAL STRUCTURE OF NOTI RESTRICTION ENDONUCLEASE BOUND TO COGNATE DNA
(NotI restriction endonuclease)
referenceStoddard et al. Structure 16 558 2008
sourceNocardia otitidiscaviarum
experimentX-ray (resolution=2.50, R-factor=0.226)
multimeric complexes3c25_AB
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureEESDHENNR

Estimated binding specificities ?

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# IC=9.619 IC/col=0.641 n_of_columns=15 specificity:   
A |   0   0   0   0   0   0   0  24   9  24  24  24  24  24   9
C |  96   0  96   0   0  96  96  24  59  24  24  24  24  24  57
G |   0  96   0  86  96   0   0  24   9  24  24  24  24  24  21
T |   0   0   0  10   0   0   0  24  19  24  24  24  24  24   9
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Related DNA sequences reported in the literature ?


sitesourcematches (E-value)
term: NOTI
GCGGCCGCPubMed3c25_B(3.58e-07), 3c25_AB(8.58e-13)
GGCCGCPubMed3c25_B(2.42e-07), 3c25_AB(3.26e-08)
NCGGCCGNPubMed3c25_AB(1.49e-05)
CGCGGCCGCPubMed3c25_B(5.39e-09), 3c25_AB(1.22e-15)
GCTGCCGCPubMed3c25_B(5.63e-04), 3c25_AB(3.50e-08)
GCGGCCGCGPubMed3c25_B(5.39e-09), 3c25_AB(1.22e-15)

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updated Tue Dec 19 07:12:24 2023