3c25_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF NOTI RESTRICTION ENDONUCLEASE BOUND TO COGNATE DNA
reference	Stoddard et al. Structure 16 558 2008
source	Nocardia otitidiscaviarum
experiment	X-ray (resolution=2.50, R-factor=?)
reference complex	3c25_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3c25_A interface=145,176,178,216,219,222,226, anfiaeffghrvypevvsteaarndqatgtcpfltaaklvetscvkaetsrgvcvvntavdnerydwlvcpnraldplfmsaasrklfgygpteplqfiaaptladqavrdgirewldrgvhvvayfqeklggelsisktdsspEfsfdwtlaevesiypvpkikrygvleiqtmDfHgsykhavgaidialvegidfhgwlptpagraalskkmEgpNlsNvfkRtfyqmaykfalsghqrcagtgfaipqsvwkswlrhlanptlidngdgtfslgdtrndsenawifvfeldpdtdasprplaphleirvnvdtlidlalrespraalgpsgpvatftdkvearmlrfwpk > 3c25_B interface=145,176,178,216,219,222,226, anfiaeffghrvypevvsteaarndqatgtcpfltaaklvetscvkaetsrgvcvvntavdnerydwlvcpnraldplfmsaasrklfgygpteplqfiaaptladqavrdgirewldrgvhvvayfqeklggelsisktdsspEfsfdwtlaevesiypvpkikrygvleiqtmDfHgsykhavgaidialvegidfhgwlptpagraalskkmEgpNlsNvfkRtfyqmaykfalsghqrcagtgfaipqsvwkswlrhlanptlidngdgtfslgdtrndsenawifvfeldpdtdasprplaphleirvnvdtlidlalrespraalgpsgpvatftdkvearmlrfwp
interface signature	EDHENNR/EDHENNR

Estimated binding specificities ?

readout + contact

# IC=9.294 IC/col=0.620 n_of_columns=15

specificity:

A |   3   3   0   2   0   1  17   4   4  10  21  20  24  23  14
C |  71   3  95   3   0  95  76   6  83   5  25  25  24  26  40
G |   7  85   0  76  96   0   2  82   4  80  25  25  24  22  15
T |  15   5   1  15   0   0   1   4   5   1  25  26  24  25  27

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updated Fri Dec 15 14:12:14 2023