2vbj_AB : 3D-footprint complex

structure name	MOLECULAR BASIS OF HUMAN XPC GENE RECOGNITION AND CLEAVAGE BY ENGINEERED HOMING ENDONUCLEASE HETERODIMERS
reference	Cabaniols et al. Nature 456 107 2008
source	CHLAMYDOMONAS REINHARDTII
experiment	X-ray (resolution=1.95, R-factor=?)
structural superfamily	Homing endonucleases;
reference complex	1t9i_B 2vbl_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2vbj_A interface=21,23,25,27,29,31,32,37,39,43,45,67,69,71,72,74,138,139, ntkynkefllylagfvdgdgSiIaQiEpNqSYkfkhRlKltfKvTqktqrrwfldklvdeigvgyvRdEgSVsNyilseikplrnfltqlqpflklkqkqanlvlkiteqlpsakespdkflevctwvdqiaalndsKTrkttsetvravld > 2vbj_B interface=21,23,25,29,31,32,37,39,43,45,65,67,69,71,72,74,138,139, ntkynkefllylagfvdadgSiIaQiepNqSSkfkhRlKltfQvTqktqrrwfldklvdeigvgYvRdSgSVsNyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvravld
interface signature	SIQENSYRKKTRESVNKT/SIQNSSRKQTYRSSVNKT

Estimated binding specificities ?

readout + contact

# IC=23.084 IC/col=1.004 n_of_columns=23

specificity:

A |   4   1   0  29   0   0   0   0   3   9  24  24  57  83   0   0  96   0   0   0   0  96  91
C |   4   2   0  61  96   0   0   0   9   6  24  24   8   2   0   0   0   0  96  96   0   0   2
G |   2   0  96   4   0   0   0   0  18  11  24  24  22   9  96  96   0   2   0   0   0   0   2
T |  86  93   0   2   0  96  96  96  66  70  24  24   9   2   0   0   0  94   0   0  96   0   1

scan!

home
updated Fri Dec 15 12:54:58 2023