2r5z_AB : 3D-footprint complex

structure name	STRUCTURE OF SCR/EXD COMPLEX BOUND TO A DNA SEQUENCE DERIVED FROM THE FKH GENE
reference	Aggarwal et al. 'Cell(Cambridge,Mass.)' 131 530 2007
source	DROSOPHILA MELANOGASTER
experiment	X-ray (resolution=2.60, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	1puf_B 2r5y_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2r5z_A interface=15,17,19,61,64,65,68,72, kknppqiypwmkrvHlRqRtsytryqtlelekefhfnryltrrrrieiahalslterqikIwfQNrrMkwkKehk > 2r5z_B interface=46,50,53,54, rrnfskqaseilneyfyshlsnpypseeakeelarkcgitvsqvsNwfgNkrIRykkni
interface signature	HRRIQNMK/NNIR

Estimated binding specificities ?

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# IC=10.886 IC/col=0.990 n_of_columns=11

specificity:

A |  64   0  96   0   0  96  96  10  10   5   6
C |  10   0   0   0   0   0   0  10  58   6   0
G |  10  96   0   0   0   0   0  12  10  85  85
T |  12   0   0  96  96   0   0  64  18   0   5

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updated Fri Dec 15 12:51:35 2023