2np2_AB : 3D-footprint complex

structure name	HBB-DNA COMPLEX
reference	Rice et al. Mol.Microbiol. 63 1319 2007
source	BORRELIA BURGDORFERI
experiment	X-ray (resolution=3.02, R-factor=?)
structural superfamily	IHF-like DNA-binding proteins;
reference complex	2np2_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2np2_A interface=53,66,70,71,72,73, rpkvtksdivdqialniknnnlklekkyirlvidaffeelksnlcsnnviefRsfgtfevrkrkgRlnaRNPQtgeyvkvldhhvayfrpgkdlkervwgik > 2np2_B interface=53,66,70,71,72,73, rpkvtksdivdqialniknnnlklekkyirlvidaffeelksnlcsnnviefRsfgtfevrkrkgRlnaRNPQtgeyvkvldhhvayfrpgkdlkervwgik
interface signature	RRRNPQ/RRRNPQ

Estimated binding specificities ?

readout + contact

# IC=17.014 IC/col=0.709 n_of_columns=24

specificity:

A |   4  90  96  24  24  24   2  96   0  76  16   0  24  24  16   0  96   0  87  24  24  24   2   0
C |   0   0   0  24  24  24   5   0   0   2  10   0  24  24   4   0   0   0   2  24  24  24   2   3
G |   2   4   0  24  24  24   2   0   0  13   0  82  24  24   2   2   0   0   5  24  24  24   5   0
T |  90   2   0  24  24  24  87   0  96   5  70  14  24  24  74  94   0  96   2  24  24  24  87  93

scan!

home
updated Fri Dec 15 12:15:42 2023