interface graph thumbnail
legend  pdf

structure nameHBB-DNA COMPLEX
(HBB)
referenceRice et al. Mol.Microbiol. 63 1319 2007
sourceBORRELIA BURGDORFERI
experimentX-ray (resolution=3.02, R-factor=0.235)
structural superfamilyIHF-like DNA-binding proteins;
sequence familyBacterial DNAbinding protein;
multimeric complexes2np2_AB
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRRRNPQ

Estimated binding specificities ?

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# IC=9.812 IC/col=0.516 n_of_columns=19 specificity:   
A |   0  90  96  24  24  24  24  24  24  24  24  24  12  14  53   0  96   0  96
C |   0   0   0  24  24  24  24  24  24  24  24  24  12  51  12   0   0   0   0
G |   0   6   0  24  24  24  24  24  24  24  24  24  12  12  19   0   0   0   0
T |  96   0   0  24  24  24  24  24  24  24  24  24  60  19  12  96   0  96   0
scan!

Dendrogram of similar interfaces ?

matrix format
  
  RTRARANAPAKT--   L                  +1owf_B    
                                +-----1 
  --RGRT--PTKTIG   L   +--------2     +1p71_B    
                       !        ! 
  ----HT--------     --3        +-----6lmj_A    
                       ! 
  --RCRTNAPTKTIC   L   +--------------2iie_A    
                     

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updated Tue Dec 19 06:43:45 2023