2it0_ABCD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A TWO-DOMAIN IDER-DNA COMPLEX CRYSTAL FORM II
reference	Wisedchaisri et al. Biochemistry 46 436 2007
source	Mycobacterium tuberculosis
experiment	X-ray (resolution=2.60, R-factor=?)
structural superfamily	Iron-dependent repressor protein, dimerization domain;"Winged helix" DNA-binding domain;
reference complex	2isz_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2it0_A interface=35,37,38,41,45,58, elvdttemylrtiydleeegvtplrariaerldqSgPTvsQtvsRmerdgllrvagdRhleltekgralaiavmrkhrlaerllvdviglpweevhaeacrwehvmsedverrlvkvlnnpttspfgnpipglvelgvasenlyf > 2it0_B interface=35,37,38,40,41,45, elvdttemylrtiydleeegvtplrariaerldqSgPTvSQtvsRmerdgllrvagdrhleltekgralaiavmrkhrlaerllvdviglpweevhaeacrwehvmsedverrlvkvlnnpttspfgnpipglvelgvasenlyf > 2it0_C interface=35,37,38,41,45,58, elvdttemylrtiydleeegvtplrariaerldqSgPTvsQtvsRmerdgllrvagdRhleltekgralaiavmrkhrlaerllvdviglpweevhaeacrwehvmsedverrlvkvlnnpttspfgnpipglvelg > 2it0_D interface=35,37,38,40,45, elvdttemylrtiydleeegvtplrariaerldqSgPTvSqtvsRmerdgllrvagdrhleltekgralaiavmrkhrlaerllvdviglpweevhaeacrwehvmsedverrlvkvlnnpttspfgnpipglvelg
interface signature	SPTQRR/SPTSQR/SPTQRR/SPTSR

Estimated binding specificities ?

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# IC=12.567 IC/col=0.838 n_of_columns=15

specificity:

A |  78   0   0   6  24  84   0   0   0   0  24  24   6  12   0
C |   6   0   0   6  24   0   0  96  96   0  24  24   6  66   0
G |   6  96  96  78  24   6  96   0   0   0  24  24  72   6   0
T |   6   0   0   6  24   6   0   0   0  96  24  24  12  12  96

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updated Fri Dec 15 12:08:22 2023