2hot_AB : 3D-footprint complex

structure name	PHAGE SELECTED HOMEODOMAIN BOUND TO MODIFIED DNA
reference	Feldman et al. 'Acs 1 755 2006
source	Drosophila melanogaster
experiment	X-ray (resolution=2.19, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	2hos_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2hot_A interface=1,46,47, RtafsseqlarlkrefnenrylterrrqqlsselglneaqvkgwfKNmrakikkst > 2hot_B interface=49,50, krprtafsseqlarlkrefnenrylterrrqqlsselglneaqvkgwfKNmrakikks
interface signature	RKN/KN

Estimated binding specificities ?

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# IC=7.310 IC/col=0.731 n_of_columns=10

specificity:

A |   3  84  96   3   0  19  24  24   3   0
C |   3   3   0   2  96  49  24  24  15   0
G |   3   6   0   3   0  15  24  24  59  96
T |  87   3   0  88   0  13  24  24  19   0

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updated Fri Dec 15 12:01:17 2023