2a3v_CD : 3D-footprint complex

structure name	STRUCTURAL BASIS FOR BROAD DNA-SPECIFICITY IN INTEGRON RECOMBINATION
reference	MacDonald et al. Nature 440 1157 2006
source	Vibrio cholerae O1 biovar eltor str. N16961
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	DNA breaking-rejoining enzymes;
reference complex	2a3v_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2a3v_C interface=21,22,25,26,29,65,66,67,68,69,70,72,73,76,87,89,91,93,95,96,160,248,295,297,298,301, mgsqfllsvrefmqtryyakKTieAYlhWitryihfhnkkhpslmgdkeveefltylavqgkvaTKTQSLaLNslSflykeilktpLsLeIrFqRSqlerklpvvltrdeirrlleivdpkhqlpikllygsglrlmecmrlrvqdidfdygairiwqgKggknrtvtlakelyphlkeqialakryydrdlhqknyggvwlptalkekypnapyefrwhylfpsfqlsldpesdvmrrhhmnetvlQkavrrsaqeagiektvtchtlrhsfathllevgadirtvqeqlghtDvKTtqIythrgasgvlsplsrl > 2a3v_D interface=21,22,24,25,26,28,29,66,67,70,73,100,243,245,248,249, mgsqfllsvrefmqtryyakKTiEAYlHWitryihfhnkkhpslmgdkeveefltylavqgkvatKTqsLalNslsflykeilktplsleirfqrsqleRklpvvltrdeirrlleivdpkhqlpikllygsglrlmecmrlrvqdidfdygairiwqgkggknrtvtlakelyphlkeqialakryydrdlhqknyggvwlptalkekypnapyefrwhylfpsfqlsldpesdvmrrhhmNeTvlQKavrrsaqeagiektvtchtlrhsfathllevgadirtvqeqlghtdvkttqiythvldrgasgvlsplsrl
interface signature	KTAYWTKTQSLLNSLLIFRSKQDKTI/KTEAYHWKTLNRNTQK

Estimated binding specificities ?

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# IC=7.056 IC/col=0.706 n_of_columns=10

specificity:

A |   0   0  24  24  18  12   0  96  18  66
C |   0  84  24  24  48   6   0   0   0   0
G |  96   0  24  24  18  18   0   0  78  30
T |   0  12  24  24  12  60  96   0   0   0

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updated Fri Dec 15 11:35:14 2023