2a3v_AB : 3D-footprint complex

structure name	STRUCTURAL BASIS FOR BROAD DNA-SPECIFICITY IN INTEGRON RECOMBINATION
reference	MacDonald et al. Nature 440 1157 2006
source	Vibrio cholerae O1 biovar eltor str. N16961
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	DNA breaking-rejoining enzymes;
reference complex	2a3v_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2a3v_A interface=20,21,25,28,64,65,66,67,68,69,71,72,75,86,88,90,92,94,95,159,247,294,296,297, gsqfllsvrefmqtryyakKTieaYlhWitryihfhnkkhpslmgdkeveefltylavqgkvaTKTQSLaLNslSflykeilktpLsLeIrFqRSqlerklpvvltrdeirrlleivdpkhqlpikllygsglrlmecmrlrvqdidfdygairiwqgKggknrtvtlakelyphlkeqialakryydrdlhqknyggvwlptalkekypnapyefrwhylfpsfqlsldpesdvmrrhhmnetvlQkavrrsaqeagiektvtchtlrhsfathllevgadirtvqeqlghtDvKTtqiythsgvlsplsrl > 2a3v_B interface=21,22,25,26,28,29,66,67,70,73,100,243,245,248,249, mgsqfllsvrefmqtryyakKTieAYlHWitryihfhnkkhpslmgdkeveefltylavqgkvatKTqsLalNslsflykeilktplsleirfqrsqleRklpvvltrdeirrlleivdpkhqlpikllygsglrlmecmrlrvqdidfdygairiwqgkggknrtvtlakelyphlkeqialakryydrdlhqknyggvwlptalkekypnapyefrwhylfpsfqlsldpesdvmrrhhmNeTvlQKavrrsaqeagiektvtchtlrhsfathllevgadirtvqeqlghtdvkttqiythvldrgasgvlsplsrl
interface signature	KTYWTKTQSLLNSLLIFRSKQDKT/KTAYHWKTLNRNTQK

Estimated binding specificities ?

readout + contact

# IC=17.332 IC/col=0.867 n_of_columns=20

specificity:

A |   0   0  24  24   9   0   0  96   0   0  24  24  24   0   0   9   0   0  96   9
C |   0  96  24  24  67   0   0   0   0   0  24  24  24   0   0   9   0   0   0  11
G |  96   0  24  24  11   0   0   0  96  96  24  24  24   0   0  69   0   0   0   9
T |   0   0  24  24   9  96  96   0   0   0  24  24  24  96  96   9  96  96   0  67

scan!

home
updated Fri Dec 15 11:34:52 2023