1zr4_A : 3D-footprint complex

structure name	STRUCTURE OF A SYNAPTIC GAMMA-DELTA RESOLVASE TETRAMER COVALENTLY LINKED TO TWO CLEAVED DNAS (Transposon gamma-delta resolvase)
reference	Grindley et al. Science 309 1210 2005
source	Escherichia coli
experiment	X-ray (resolution=3.40, R-factor=0.266)
structural superfamily	Resolvase-like;Homeodomain-like;
sequence family	Resolvase, N terminal domain; Helixturnhelix domain of resolvase;
multimeric complexes	1gdt_AB
reference complex	1gdt_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1zr4_A interface=11,126,130,140,142,171,172,173,174,176,177, malfgyarvsTsqqsldiqvralkdagvkanriftdkasgsssdrkgldllrmkvkegdvilvkkldrlgrdtadmiqlikefdaqgvsirfiddgistdsyigkmvvtilsavaqaerqrilqrTnegRqeamakgvvFgRkrkidrdavlnmwqqglgashisktmniARSTvYKvinesn
interface signature	TTRFRARSTYK

Estimated binding specificities ?

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# IC=11.912 IC/col=0.916 n_of_columns=13

specificity:

A |   1   0   4  24   0   0  51   0  96  59   9   4   0
C |   1   0   1  24  96   0  15   0   0   9   9   1   0
G |   4  96   1  24   0  94  17   0   0  17  19   1   0
T |  90   0  90  24   0   2  13  96   0  11  59  90  96

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updated Mon Dec 18 06:31:13 2023