1gdt_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A SITE-SPECIFIC RECOMBINASE, GAMMA-DELTA RESOLVASE COMPLEXED WITH A 34 BP CLEAVAGE SITE
reference	Steitz et al. 'Cell(Cambridge,Mass.)' 82 193 1995
source	Escherichia coli
experiment	X-ray (resolution=3.00, R-factor=?)
structural superfamily	Resolvase-like;Homeodomain-like;
reference complex	1gdt_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1gdt_A interface=122,125,126,130,140,142,171,172,173,174,176,177, mrlfgyarvstsqqsldiqvralkdagvkanriftdkasgsssdrkgldllrmkveegdvilvkkldrlgrdtadmiqlikefdaqgvsirfiddgistdgemgkmvvtilsavaqaerqrIleRTnegRqeamakgvvFgRkrkidrdavlnmwqqglgashisktmniARSTvYKvinesn > 1gdt_B interface=126,140,142,171,172,173,174,176,177, mrlfgyarvstsqqsldiqvralkdagvkanriftdkasgsssdrkgldllrmkveegdvilvkkldrlgrdtadmiqlikefdaqgvsirfiddgistdgemgkmvvtilsavaqaerqrilerTnegrqeamakgvvFgRkrkidrdavlnmwqqglgashisktmniARSTvYKvinesn
interface signature	IRTRFRARSTYK/TFRARSTYK

Estimated binding specificities ?

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# IC=24.410 IC/col=0.872 n_of_columns=28

specificity:

A |   2   0   1   0   0   1  24  24  96  73  24  24   0  88   1  47  92  88  24   0  92   3   0   0  24  92   0  96
C |   1   0   0  94  96  16  24  24   0   5  24  24   3   5   0  46   3   1  24   0   1   4  92   0  24   0  96   0
G |   1  96   3   2   0  76  24  24   0  13  24  24   3   3   3   3   1   3  24   4   0   1   1  96  24   1   0   0
T |  92   0  92   0   0   3  24  24   0   5  24  24  90   0  92   0   0   4  24  92   3  88   3   0  24   3   0   0

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updated Fri Dec 15 09:04:55 2023