1jt0_ABCD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A COOPERATIVE QACR-DNA COMPLEX
reference	Schumacher et al. 'EMBO 21 1210 2002
source	STAPHYLOCOCCUS AUREUS
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	Tetracyclin repressor-like, C-terminal domain;Homeodomain-like;
reference complex	1jt0_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1jt0_A interface=24,34,35,37,39,40, nlkdkilgvakelfikngynattTgeivklsesSKgNlYYhfktkenlfleilnieeskwqeqwkkeqikaktnrekfylynelsltteyyyplqnaiiefyteyyktnsinekmnklenkyidayhvifkegnlngewsindvnavskiaanavngivtftheqnineriklmnkfsqiflnglskh > 1jt0_B interface=24,34,35,37,39,40, nlkdkilgvakelfikngynattTgeivklsesSKgNlYYhfktkenlfleilnieeskwqeqwkkeqikaktnrekfylynelsltteyyyplqnaiiefyteyyktnsinekmnklenkyidayhvifkegnlngewsindvnavskiaanavngivtftheqnineriklmnkfsqiflnglskh > 1jt0_C interface=24,34,35,37,39,40, nlkdkilgvakelfikngynattTgeivklsesSKgNlYYhfktkenlfleilnieeskwqeqwkkeqikaktnrekfylynelsltteyyyplqnaiiefyteyyktnsinekmnklenkyidayhvifkegnlngewsindvnavskiaanavngivtftheqnineriklmnkfsqiflnglskh > 1jt0_D interface=24,34,35,37,39,40, nlkdkilgvakelfikngynattTgeivklsesSKgNlYYhfktkenlfleilnieeskwqeqwkkeqikaktnrekfylynelsltteyyyplqnaiiefyteyyktnsinekmnklenkyidayhvifkegnlngewsindvnavskiaanavngivtftheqnineriklmnkfsqiflngl
interface signature	TSKNYY/TSKNYY/TSKNYY/TSKNYY

Estimated binding specificities ?

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# IC=19.895 IC/col=0.904 n_of_columns=22

specificity:

A |  96   0  53  20  96   0   0  24  24   0   0   0  96  17  24   0   0   0   9  24  96   2
C |   0   0  13  17   0  96  96  24  24   0  96   0   0   1  24   0   0   0  76  24   0   1
G |   0   0  15  44   0   0   0  24  24   0   0  96   0  13  24  96  96   0   4  24   0   1
T |   0  96  15  15   0   0   0  24  24  96   0   0   0  65  24   0   0  96   7  24   0  92

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updated Fri Dec 15 09:17:23 2023