interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF A COOPERATIVE QACR-DNA COMPLEX
(HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN QACA 5'REGION)
referenceSchumacher et al. 'EMBO 21 1210 2002
sourceSTAPHYLOCOCCUS AUREUS
experimentX-ray (resolution=2.90, R-factor=0.222)
structural superfamilyTetracyclin repressor-like, C-terminal domain;Homeodomain-like;
sequence familyQacRlike protein, Cterminal region; Bacterial regulatory proteins, tetR family;
multimeric complexes1jt0_ABCD
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureTSKNYY

Estimated binding specificities ?

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# IC=6.464 IC/col=0.923 n_of_columns=7 specificity:   
A |  96   0  69   8  87   0   8
C |   0   0   8   8   0  96  69
G |   0   0   8  69   9   0   8
T |   0  96  11  11   0   0  11
scan!

Related DNA sequences reported in the literature ?


sitesourcematches (E-value)
term: QACR
TACCGACCGNTNGGTNPubMed1jt0_ABCD(6.30e-03)

Dendrogram of similar interfaces ?

matrix format

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updated Tue Dec 19 05:48:20 2023